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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_29949485_29949923_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29949485 - 29949923
Intron Length:
439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGTTTCTGAACA
Flanking Amino Acid:
NVNKYMGLTQVDLTGHSIFD
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.1
78.8
38.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
73.2
0.52
1
69.8
40.4
Minor 5ss
47.5
-0.2
2.6
67.8
43
Minor BPS
73.9
0.75
1.3
81.01
33.9

Associated Gene:

Gene:
EPAS1
Ensembl Gene ID:
ENSAPLG00000007160
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039651
29933564 - 29973325
39762
ENSAPLT00000027933
29890219 - 29973325
83107
ENSAPLT00000007487
29894709 - 29973325
78617