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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_29950009_29950495_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29950009 - 29950495
Intron Length:
487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATTGTG
5'SS Class:
major
3'SS Sequence:
TTTCCTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TTTCCTTTTATA
Flanking Amino Acid:
EIRENLSLKNGPGFGKKNKE
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
70.8
39.4
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
87.9
0.85
0.6
84
24.2
Minor 5ss
36.5
-1.5
3.3
46.1
43.5
Minor BPS
65.1
0.47
1.6
76.51
34.2

Associated Gene:

Gene:
EPAS1
Ensembl Gene ID:
ENSAPLG00000007160
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039651
29933564 - 29973325
39762
ENSAPLT00000027933
29890219 - 29973325
83107
ENSAPLT00000007487
29894709 - 29973325
78617