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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_29960020_29964683_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29960020 - 29964683
Intron Length:
4664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTCAT
5'SS Class:
major
3'SS Sequence:
TCTCATTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
SENMTKSHQNLCTKGQVVTG
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1.1
71.3
40.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.4
0.82
0.7
84.1
30.4
Minor 5ss
38.8
-1.3
3.1
60.2
44.1
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
EPAS1
Ensembl Gene ID:
ENSAPLG00000007160
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027933
29890219 - 29973325
83107
ENSAPLT00000007487
29894709 - 29973325
78617
ENSAPLT00000039651
29933564 - 29973325
39762