Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_29964832_29965594_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29964832 - 29965594

Intron Length:

763

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTTGT

5'SS Class:

strong_major

3'SS Sequence:

TCTTTCTTGCTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTTAAA

U12 Branch Point Sequence:

AGTGCCTTAAAC

Flanking Amino Acid:

QCIICVNYVLSEIEKNDIVF

Intron Amino Acid Position:

344

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

96.5

1.1

0.7

87.9

29.3

Major BPS

65.4

0.38

1.1

67.5

Major PPT

77.6

0.62

0.9

73.3

37.2

Minor 5ss

41.9

-0.9

2.9

58.7

45.8

Minor BPS

66.5

0.5

1.5

71.17

39.6

Associated Gene:

Gene:

EPAS1

Ensembl Gene ID:

ENSAPLG00000007160

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027933

29890219 - 29973325

83107

ENSAPLT00000007487

29894709 - 29973325

78617

ENSAPLT00000039651

29933564 - 29973325

39762