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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_29966317_29967212_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29966317 - 29967212
Intron Length:
896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CATTTCTGTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
AAATTCTCATTT
Flanking Amino Acid:
SASSNSSCSTPSSPGDYYSS
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.3
32.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
78
0.63
0.9
73
36.9
Minor 5ss
33.3
-1.9
2.9
41.3
44.8
Minor BPS
48.7
-0
1.7
64.52
39.9

Associated Gene:

Gene:
EPAS1
Ensembl Gene ID:
ENSAPLG00000007160
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027933
29890219 - 29973325
83107
ENSAPLT00000007487
29894709 - 29973325
78617
ENSAPLT00000039651
29933564 - 29973325
39762