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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_29968997_29970085_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29968997 - 29970085
Intron Length:
1089

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
CCTTTCTCAACA
Flanking Amino Acid:
HSPGMPVYKKRPLDAFGQRG
Intron Amino Acid Position:
675

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
30
Major BPS
79.2
0.72
1
75
40
Major PPT
77.4
0.62
0.8
73.3
30.3
Minor 5ss
33.1
-1.9
3.4
48.3
47.4
Minor BPS
64.9
0.46
1.6
70.77
41.8

Associated Gene:

Gene:
EPAS1
Ensembl Gene ID:
ENSAPLG00000007160
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039651
29933564 - 29973325
39762
ENSAPLT00000027933
29890219 - 29973325
83107
ENSAPLT00000007487
29894709 - 29973325
78617