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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_29970210_29970297_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29970210 - 29970297
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAATTATG
5'SS Class:
major
3'SS Sequence:
CTCCAAATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATCAT
U12 Branch Point Sequence:
TTTTCTCCAAAT
Flanking Amino Acid:
EEQALQQLSGGDPSVTNPSH
Intron Amino Acid Position:
717

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
74.6
41.7
Major BPS
73
0.57
1.2
74
41.2
Major PPT
66.1
0.36
0.9
59
35.5
Minor 5ss
39
-1.2
2.8
43.3
43.8
Minor BPS
56.2
0.27
2
82.57
38.3

Associated Gene:

Gene:
EPAS1
Ensembl Gene ID:
ENSAPLG00000007160
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039651
29933564 - 29973325
39762
ENSAPLT00000027933
29890219 - 29973325
83107
ENSAPLT00000007487
29894709 - 29973325
78617