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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_29971145_29971823_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29971145 - 29971823
Intron Length:
679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TACTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAC
U12 Branch Point Sequence:
AGTGCCATGACT
Flanking Amino Acid:
YPAQPTHKVSGVTSRLLGPS
Intron Amino Acid Position:
823

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
28.9
Major BPS
65.2
0.38
1
57.3
39.1
Major PPT
83.7
0.76
0.8
81
30.6
Minor 5ss
30.7
-2.2
3.3
40.8
45.7
Minor BPS
57.9
0.33
1.8
75.54
40.8

Associated Gene:

Gene:
EPAS1
Ensembl Gene ID:
ENSAPLG00000007160
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039651
29933564 - 29973325
39762
ENSAPLT00000027933
29890219 - 29973325
83107
ENSAPLT00000007487
29894709 - 29973325
78617