About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_2997699_2997819_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2997699 - 2997819
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
ATTGATCCAACT
Flanking Amino Acid:
VKIEDLKQMKAYIKHLKKQQ
Intron Amino Acid Position:
927

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
75.5
40.6
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
87.5
0.84
0.6
84.2
23.8
Minor 5ss
44.7
-0.6
2.9
58.1
40.6
Minor BPS
45.3
-0.2
2
68.44
42.2

Associated Gene:

Gene:
PLCB4
Ensembl Gene ID:
ENSAPLG00000013577
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014232
2968731 - 3058313
89583