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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30016317_30022713_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30016317 - 30022713
Intron Length:
6397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CAATTTCTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
CTCTCTCCAATT
Flanking Amino Acid:
GVDSEFIRQAGDVVDMPTLS
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.3
32.8
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
71.2
0.48
1
66.1
39.1
Minor 5ss
33.3
-1.9
2.9
41.3
44.8
Minor BPS
49
0.01
1.9
68.25
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001954
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001947
30014238 - 30040116
25879