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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30034671_30036665_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30034671 - 30036665
Intron Length:
1995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTCTG
5'SS Class:
major
3'SS Sequence:
GTTTTTCCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
TCCTCCTCATCT
Flanking Amino Acid:
FLQLQTSPAPSDERLQDSHV
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1.1
66
45.2
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
82.3
0.73
0.8
76.9
32
Minor 5ss
40.7
-1
3.1
60.3
43.9
Minor BPS
59
0.36
1.9
75.91
46.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001956
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001950
30034413 - 30036974
2562