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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30065469_30065601_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30065469 - 30065601
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TCCCTCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
CTCGCCTCACCG
Flanking Amino Acid:
YVPTVFDHYAVSVTVGGKQY
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
82.1
0.72
0.7
76.3
25.7
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
46
-0.4
2
50.75
49.3

Associated Gene:

Gene:
RHOQ
Ensembl Gene ID:
ENSAPLG00000029905
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045285
30065327 - 30082113
16787