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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30065661_30080000_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30065661 - 30080000
Intron Length:
14340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAGGAT
U12 Branch Point Sequence:
TTGCAGATAACA
Flanking Amino Acid:
LLGLYDTAGQEDYDRLRPLS
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
71.2
34.5
Major BPS
59.7
0.24
1.5
59.7
46.7
Major PPT
92.3
0.95
0.6
92.1
18.5
Minor 5ss
26.8
-2.7
2.9
32.6
42.4
Minor BPS
44.7
-0.4
2.4
63
42.7

Associated Gene:

Gene:
RHOQ
Ensembl Gene ID:
ENSAPLG00000029905
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045285
30065327 - 30082113
16787