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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_3006578_3009360_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3006578 - 3009360
Intron Length:
2783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATAT
5'SS Class:
strong_major
3'SS Sequence:
TATGGCTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TAGTCATTAAAT
Flanking Amino Acid:
YNEESFVFRKVILPDLAVLR
Intron Amino Acid Position:
762

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
77.7
33.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.1
0.59
1
65.9
45
Minor 5ss
38.2
-1.3
3.4
55.2
49
Minor BPS
65.5
0.56
1.7
80.2
40.9

Associated Gene:

Gene:
PLCB4
Ensembl Gene ID:
ENSAPLG00000013577
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014232
2968731 - 3058313
89583