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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_300747_300828_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
300747 - 300828
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAACTA
5'SS Class:
major
3'SS Sequence:
TATACTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
GGTTACTTATAT
Flanking Amino Acid:
CLNGKVTCSKVWCGPRPCVI
Intron Amino Acid Position:
901

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
65.2
40.7
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
75.4
0.57
0.9
66.7
40.1
Minor 5ss
33.8
-1.8
3.5
47.8
47.6
Minor BPS
52.5
0.16
1.9
72.46
43.4

Associated Gene:

Gene:
JAG1
Ensembl Gene ID:
ENSAPLG00000009296
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009806
298130 - 331665
33536