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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30078708_30082377_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
30078708 - 30082377
Intron Length:
3670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCTT
5'SS Class:
major
3'SS Sequence:
CTTTCTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
ATTTAGAAAACA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
76.3
38.9
Major BPS
70
0.5
1
67
39.8
Major PPT
85.6
0.8
0.7
84.5
23.3
Minor 5ss
46.3
-0.4
2.8
67.8
43.1
Minor BPS
42.4
-0.5
2.5
63.73
42.3

Associated Gene:

Gene:
PIGF
Ensembl Gene ID:
ENSAPLG00000007535
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007819
30078327 - 30102638
24312