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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30081039_30081789_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30081039 - 30081789
Intron Length:
751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACTGG
5'SS Class:
major
3'SS Sequence:
ATTTTCTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
ATTTTCTTGACA
Flanking Amino Acid:
VEQGQKLAKEIGAYCYVECS
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
63
44.1
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
80.2
0.68
1
76.8
36.8
Minor 5ss
42.6
-0.8
3
55.9
48.3
Minor BPS
80.5
0.95
1
84.28
28.2

Associated Gene:

Gene:
RHOQ
Ensembl Gene ID:
ENSAPLG00000029905
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045285
30065327 - 30082113
16787