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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30102933_30103028_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30102933 - 30103028
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
TTTCCTTCCGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TCCTTCCTAACG
Flanking Amino Acid:
MVCEKCERKLGTVIT
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68
0.42
1.1
58.8
40.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
80.6
0.69
0.7
77.3
24.6
Minor 5ss
32
-2.1
2.9
37.9
39.5
Minor BPS
58.5
0.13
1.8
63.18
44.9

Associated Gene:

Gene:
CRIPT
Ensembl Gene ID:
ENSAPLG00000029053
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026217
30102832 - 30107018
4187