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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30103095_30103450_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30103095 - 30103450
Intron Length:
356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCTGCGC
5'SS Class:
major
3'SS Sequence:
GTTCCTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAC
U12 Branch Point Sequence:
GGGAAATTTACT
Flanking Amino Acid:
TWKDGARNTTESGGRKLNEN
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.5
0.3
1.1
47.8
42.6
Major BPS
70
0.5
0.9
61.4
35.9
Major PPT
81.6
0.71
0.8
77
31.6
Minor 5ss
24.7
-2.9
3.2
33.5
41.8
Minor BPS
42.8
-0.4
2
57.11
44.3

Associated Gene:

Gene:
CRIPT
Ensembl Gene ID:
ENSAPLG00000029053
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026217
30102832 - 30107018
4187