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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30103506_30104163_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30103506 - 30104163
Intron Length:
658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CCTTATTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTTCCTTATTT
Flanking Amino Acid:
ENKALTSKKARFDPYGKNKF
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
1.2
90.9
28.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
80.1
0.68
0.8
72.1
37.5
Minor 5ss
37.1
-1.5
2.8
51.6
44.9
Minor BPS
81.5
1.07
1.4
95.91
30.5

Associated Gene:

Gene:
CRIPT
Ensembl Gene ID:
ENSAPLG00000029053
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026217
30102832 - 30107018
4187