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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_3011895_3014218_R

Intron Information:

Intron Rank:
21
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
3011895 - 3014218
Intron Length:
2324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGAAATAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
TTTTCTTGAAAT
Flanking Amino Acid:
QGKFEYNGSCGYLLKPDFMR
Intron Amino Acid Position:
672

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
77.5
32.9
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
57
0.16
1.2
62.6
41.5
Minor 5ss
28.5
-2.5
3.2
31.7
42.6
Minor BPS
73.5
0.82
1.5
90.38
32.8

Associated Gene:

Gene:
PLCB4
Ensembl Gene ID:
ENSAPLG00000013577
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014232
2968731 - 3058313
89583