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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_301295_302071_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
301295 - 302071
Intron Length:
777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
CTTCCCATTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
CTTCCCATTATA
Flanking Amino Acid:
PGFAGPDCRININECQSSPC
Intron Amino Acid Position:
826

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.9
39.9
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
75.8
0.58
0.8
69.6
29.6
Minor 5ss
42.4
-0.8
3.1
65
39.9
Minor BPS
49.7
-0
1.9
65.84
40.3

Associated Gene:

Gene:
JAG1
Ensembl Gene ID:
ENSAPLG00000009296
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009806
298130 - 331665
33536