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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30134992_30135666_F

Intron Information:

Intron Rank:
127966
Intron Class:
major
Intron Phase:
Intron Coordinates:
30134992 - 30135666
Intron Length:
675

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTACTGTGT
5'SS Class:
major
3'SS Sequence:
TTTTTTAACCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.6
0.25
1.2
54.3
45.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
76.7
0.6
0.9
71.4
38.6
Minor 5ss
37
-1.5
3.5
47.5
47.9
Minor BPS
85.8
1.1
0.9
89.58
24.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018951
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022655
30134659 - 30139085
4427