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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30135851_30139008_F

Intron Information:

Intron Rank:
127967
Intron Class:
major
Intron Phase:
Intron Coordinates:
30135851 - 30139008
Intron Length:
3158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCCAA
5'SS Class:
major
3'SS Sequence:
ATGTTATTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATGTTATTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
67
40.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
72.1
0.5
1
67
42.4
Minor 5ss
37.2
-1.4
3
47.6
47.8
Minor BPS
67.1
0.53
1.6
74.63
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018951
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022655
30134659 - 30139085
4427