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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_302158_302271_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
302158 - 302271
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GTTTTTTTAATG
Flanking Amino Acid:
QNTNDCSPHPCYNSGTCVDG
Intron Amino Acid Position:
797

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
88.2
0.86
0.6
84
24.2
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
72.1
0.56
1.2
71.21
36.3

Associated Gene:

Gene:
JAG1
Ensembl Gene ID:
ENSAPLG00000009296
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009806
298130 - 331665
33536