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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_3021914_3023434_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3021914 - 3023434
Intron Length:
1521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGGATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTGTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TTTGCACTGATC
Flanking Amino Acid:
EDDNEEEIESADQEEEAHPE
Intron Amino Acid Position:
504

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
80.3
33.8
Major BPS
71.2
0.53
1
61
37.5
Major PPT
87.2
0.84
0.8
84
31
Minor 5ss
32.9
-2
3.4
45.4
43.9
Minor BPS
48.3
-0.1
2
67.61
38.2

Associated Gene:

Gene:
PLCB4
Ensembl Gene ID:
ENSAPLG00000013577
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014232
2968731 - 3058313
89583