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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30222909_30224210_R

Intron Information:

Intron Rank:
138633
Intron Class:
major
Intron Phase:
Intron Coordinates:
30222909 - 30224210
Intron Length:
1302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAGG
5'SS Class:
strong_major
3'SS Sequence:
TTATGTAACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TCTTATGTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.8
42.1
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
68.3
0.41
1
62.5
42.1
Minor 5ss
32.2
-2
3
40.4
45.3
Minor BPS
54.1
0.12
2.2
71.69
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022088
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026771
30222505 - 30225333
2829