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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30234754_30236885_F

Intron Information:

Intron Rank:
139836
Intron Class:
major
Intron Phase:
Intron Coordinates:
30234754 - 30236885
Intron Length:
2132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
ATTGTTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
ATTGTTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
76.3
34
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
78.1
0.63
1
73.8
40
Minor 5ss
47
-0.3
2.8
67.3
37.5
Minor BPS
71.3
0.66
1.3
76.76
34.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025183
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034028
30234496 - 30244262
9767