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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_3024533_3027004_R

Intron Information:

Intron Rank:
14
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3024533 - 3027004
Intron Length:
2472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTATGTTAT
5'SS Class:
weak_major
3'SS Sequence:
AATTATTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TTTTCTATAAAT
Flanking Amino Acid:
LLKQPLETHPLDPGKALPSP
Intron Amino Acid Position:
442

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
70.7
35.7
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
80.3
0.68
0.9
73.2
40.9
Minor 5ss
50.6
0.02
2.5
71.8
39.2
Minor BPS
70.5
0.72
1.7
90.4
32.8

Associated Gene:

Gene:
PLCB4
Ensembl Gene ID:
ENSAPLG00000013577
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014232
2968731 - 3058313
89583