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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30267456_30270180_F

Intron Information:

Intron Rank:
130973
Intron Class:
major
Intron Phase:
Intron Coordinates:
30267456 - 30270180
Intron Length:
2725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAGAT
U12 Branch Point Sequence:
CATACATAAAGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.7
80.2
27.1
Major BPS
66.3
0.41
1
61
37.5
Major PPT
88.5
0.87
0.6
85
22.5
Minor 5ss
27.5
-2.6
3
32.5
42.3
Minor BPS
43.4
-0.5
2.1
53.28
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020342
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025644
30267402 - 30278481
11080