About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30270291_30277775_F

Intron Information:

Intron Rank:
130974
Intron Class:
major
Intron Phase:
Intron Coordinates:
30270291 - 30277775
Intron Length:
7485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTGCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
ATTTGTCTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
79.7
28.2
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
75.9
0.58
0.9
71.3
33.1
Minor 5ss
34.4
-1.8
3.3
44.6
43.6
Minor BPS
51.6
0.03
2
69.03
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020342
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026312
30269866 - 30278481
8616
ENSAPLT00000025644
30267402 - 30278481
11080