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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_3029200_3030151_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3029200 - 3030151
Intron Length:
952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TTTACTATGATT
Flanking Amino Acid:
YEPDEDLKSKGLISSDGFCR
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
78.6
35.9
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
78.2
0.63
0.8
70
36.6
Minor 5ss
35.7
-1.6
3.4
48.7
47.5
Minor BPS
59.6
0.38
1.6
80.64
35.1

Associated Gene:

Gene:
PLCB4
Ensembl Gene ID:
ENSAPLG00000013577
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014232
2968731 - 3058313
89583