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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_302928_303051_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
302928 - 303051
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATACC
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTGTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTCTAACAACT
Flanking Amino Acid:
AGWEGATCNIARNSSCLPNP
Intron Amino Acid Position:
749

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
81.2
30.6
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
78.9
0.65
0.9
72.2
37.3
Minor 5ss
36.4
-1.5
2.8
46.5
41.8
Minor BPS
48
-0
2
76.16
39.6

Associated Gene:

Gene:
JAG1
Ensembl Gene ID:
ENSAPLG00000009296
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009806
298130 - 331665
33536