Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30297377_30297827_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30297377 - 30297827

Intron Length:

451

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGA|GTACGTGAG

5'SS Class:

major

3'SS Sequence:

TTTTTTTTCTTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTAAC

U12 Branch Point Sequence:

TGGCATGTCACT

Flanking Amino Acid:

RLDKSVVQDKDHIMEHLEGV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.3

0.36

1.1

57.1

42.4

Major BPS

73.1

0.57

0.9

73.7

27.1

Major PPT

91.3

0.93

0.5

92.5

17.5

Minor 5ss

32.2

-2

3.3

35.8

42.2

Minor BPS

40.1

-0.7

2.4

58.68

44.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023817

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034589

30295182 - 30298087

2906