Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30298442_30299250_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30298442 - 30299250

Intron Length:

809

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTGAGGGGG

5'SS Class:

major

3'SS Sequence:

GATGTGCTTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CAGTGAT

U12 Branch Point Sequence:

TGCTCAGTGATG

Flanking Amino Acid:

RKAAAGAEEAEDYGNMLLAE

Intron Amino Acid Position:

112

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.4

0.55

55.1

43.9

Major BPS

61.1

0.28

1.2

52.7

43.2

Major PPT

71.6

0.49

66.1

44.9

Minor 5ss

23.7

-3

3.3

29.1

43.5

Minor BPS

44.1

-0.6

2.3

52.01

Associated Gene:

Gene:

TTC7A

Ensembl Gene ID:

ENSAPLG00000007643

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007960

30298108 - 30465684

167577

ENSAPLT00000007950

30298108 - 30465684

167577