Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30299415_30301139_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

30299415 - 30301139

Intron Length:

1725

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTAAGTGGG

5'SS Class:

strong_major

3'SS Sequence:

ACTTCTGTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTTAC

U12 Branch Point Sequence:

TTCCCCTCACTT

Flanking Amino Acid:

TNILSRGKLRPKYMVEAMLI

Intron Amino Acid Position:

167

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.6

0.79

67.1

44.6

Major BPS

77.8

0.69

0.9

69.4

37.3

Major PPT

80.1

0.68

0.9

76.9

36.6

Minor 5ss

31.6

-2.1

3.1

31.9

42.5

Minor BPS

53.3

0.18

1.9

73.49

43.7

Associated Gene:

Gene:

TTC7A

Ensembl Gene ID:

ENSAPLG00000007643

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007960

30298108 - 30465684

167577

ENSAPLT00000007950

30298108 - 30465684

167577