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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_3030261_3034922_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3030261 - 3034922
Intron Length:
4662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTAACCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTTGCTGAATT
Flanking Amino Acid:
VDQLVSFLNEHQRDPRLNEI
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
81.6
33.2
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
73.5
0.53
0.8
71.8
32.9
Minor 5ss
55.3
0.18
2.7
73.8
36.4
Minor BPS
68.3
0.65
1.9
88.83
36.2

Associated Gene:

Gene:
PLCB4
Ensembl Gene ID:
ENSAPLG00000013577
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014232
2968731 - 3058313
89583