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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30316905_30318590_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30316905 - 30318590
Intron Length:
1686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
TTGTCTGTAATC
Flanking Amino Acid:
AQVYLQELEKTLNSTHSRSI
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
93.6
0.98
0.6
89.1
19.8
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
60.9
0.32
2
73.46
38.5

Associated Gene:

Gene:
TTC7A
Ensembl Gene ID:
ENSAPLG00000007643
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007960
30298108 - 30465684
167577
ENSAPLT00000007950
30298108 - 30465684
167577