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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30340338_30351521_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30340338 - 30351521
Intron Length:
11184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTTC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTTCCTTTCCT
Flanking Amino Acid:
LALSMVACGKSAYAVSVLKE
Intron Amino Acid Position:
483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
76.3
33.8
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
84.8
0.78
0.7
77
31.7
Minor 5ss
40.6
-1
3.4
58.3
46.6
Minor BPS
51.2
0.12
3.7
92.33
36.7

Associated Gene:

Gene:
TTC7A
Ensembl Gene ID:
ENSAPLG00000007643
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007960
30298108 - 30465684
167577