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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_3034981_3035592_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3034981 - 3035592
Intron Length:
612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
AATTTCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
CATTCTCTAATA
Flanking Amino Acid:
RTDIEDLFKKINGDKTDYLT
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
79.7
29
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
84.8
0.78
0.8
81.8
34.9
Minor 5ss
42.9
-0.8
2.7
55.2
42.1
Minor BPS
60.3
0.32
1.7
68.89
37.8

Associated Gene:

Gene:
PLCB4
Ensembl Gene ID:
ENSAPLG00000013577
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014232
2968731 - 3058313
89583