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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_3035694_3036838_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3035694 - 3036838
Intron Length:
1145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTTGC
5'SS Class:
weak_major
3'SS Sequence:
CATTTTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TTTTGCTGAATA
Flanking Amino Acid:
LKELGLPSGKNDEIEPAAFT
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.2
65.8
41.1
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
82.1
0.72
0.9
76.6
37.2
Minor 5ss
57.7
0.26
2
70.7
39.7
Minor BPS
65.7
0.49
1.9
80.19
36

Associated Gene:

Gene:
PLCB4
Ensembl Gene ID:
ENSAPLG00000013577
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014232
2968731 - 3058313
89583