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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30362845_30374477_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30362845 - 30374477
Intron Length:
11633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TATTGTCCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
CAGCTCTTAAAT
Flanking Amino Acid:
GLSYSLQATDATLKSTQDEF
Intron Amino Acid Position:
522

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
81.9
26.3
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
80.5
0.69
0.9
73.5
36.8
Minor 5ss
36.6
-1.5
3
45.9
43.7
Minor BPS
58.5
0.34
1.5
67.53
42.9

Associated Gene:

Gene:
TTC7A
Ensembl Gene ID:
ENSAPLG00000007643
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007950
30298108 - 30465684
167577
ENSAPLT00000007960
30298108 - 30465684
167577