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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_3036921_3042156_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3036921 - 3042156
Intron Length:
5236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
TTTTCCCCCACT
Flanking Amino Acid:
TNTNGKIPVRSITRTFASGK
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
75
35.3
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
85.1
0.79
0.8
84.6
30.4
Minor 5ss
36.6
-1.5
3.3
47.9
47.8
Minor BPS
54.7
0.23
2.3
85.27
40.9

Associated Gene:

Gene:
PLCB4
Ensembl Gene ID:
ENSAPLG00000013577
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014232
2968731 - 3058313
89583