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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30374536_30377760_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30374536 - 30377760
Intron Length:
3225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
GTTGTCCTTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
TTGTCCTTGAAG
Flanking Amino Acid:
FNKKALQALERARELGPEDH
Intron Amino Acid Position:
541

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.8
38.7
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
69
0.43
1.1
68.4
37.7
Minor 5ss
29.7
-2.3
2.6
33.4
41.8
Minor BPS
69.7
0.48
1.5
71.8
41.2

Associated Gene:

Gene:
TTC7A
Ensembl Gene ID:
ENSAPLG00000007643
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007960
30298108 - 30465684
167577
ENSAPLT00000007950
30298108 - 30465684
167577