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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30384297_30412554_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30384297 - 30412554
Intron Length:
28258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCATCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTTTTTCATCT
Flanking Amino Acid:
MAIVEYPESFSLLFTKVKLE
Intron Amino Acid Position:
619

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
100
1.24
0.5
100
0
Major PPT
86.6
0.82
0.7
81.1
30.5
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
54.8
0.23
1.8
75.13
42.3

Associated Gene:

Gene:
TTC7A
Ensembl Gene ID:
ENSAPLG00000007643
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007950
30298108 - 30465684
167577
ENSAPLT00000007960
30298108 - 30465684
167577