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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_3042211_3042746_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3042211 - 3042746
Intron Length:
536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
TTCTCTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TATTTCTAAAAT
Flanking Amino Acid:
NVSPMTCLKKHWMKLAFLTN
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
72.5
33.5
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
87
0.83
0.7
85.2
27.8
Minor 5ss
42.7
-0.8
2.8
58.2
40.5
Minor BPS
64.4
0.53
1.8
82.08
39

Associated Gene:

Gene:
PLCB4
Ensembl Gene ID:
ENSAPLG00000013577
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014232
2968731 - 3058313
89583