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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30515459_30519616_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30515459 - 30519616
Intron Length:
4158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCGTG
5'SS Class:
major
3'SS Sequence:
TCTTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
AATTCTGCAACA
Flanking Amino Acid:
MADQLTEEQIA
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
64.9
41.1
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
89.3
0.88
0.6
84.5
23.3
Minor 5ss
34.6
-1.7
3.4
43.3
45.4
Minor BPS
49.7
-0
2.2
67.21
39.1

Associated Gene:

Gene:
CALM2
Ensembl Gene ID:
ENSAPLG00000030583
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024957
30466969 - 30519619
52651