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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_3052423_3053746_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3052423 - 3053746
Intron Length:
1324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTCTAT
5'SS Class:
major
3'SS Sequence:
TTCTGTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCTGTTTAACA
Flanking Amino Acid:
NSVRFGAIPKDPKILTALEA
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
67.9
39.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.3
0.68
0.9
76.6
36.3
Minor 5ss
44.5
-0.6
3.2
64.7
46.6
Minor BPS
69.4
0.6
1.7
78.6
38.6

Associated Gene:

Gene:
PLCB4
Ensembl Gene ID:
ENSAPLG00000013577
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014232
2968731 - 3058313
89583