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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_3054182_3058229_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3054182 - 3058229
Intron Length:
4048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTGTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TGATCTGTATTT
Flanking Amino Acid:
DGAVFDRYEEESFVFESNCL
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
73.3
36.4
Major BPS
76.8
0.67
1
66
40.9
Major PPT
82.5
0.73
0.8
79.8
32.4
Minor 5ss
30.8
-2.2
3.3
41.8
45
Minor BPS
47.8
-0
2.2
69.05
42.4

Associated Gene:

Gene:
PLCB4
Ensembl Gene ID:
ENSAPLG00000013577
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014232
2968731 - 3058313
89583