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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_30588085_30588707_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30588085 - 30588707
Intron Length:
623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATAC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCTCTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ACTTCTTTATTT
Flanking Amino Acid:
VDETLMCSFQILKPSEKKAK
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
73.8
30.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
74.9
0.56
1
79.8
32.2
Minor 5ss
44.3
-0.6
2.8
58.5
46.3
Minor BPS
65.5
0.56
1.5
77.64
39.7

Associated Gene:

Gene:
PPP1CB
Ensembl Gene ID:
ENSAPLG00000008367
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008727
30587287 - 30614883
27597